PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000144.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 229aa MW: 25273.5 Da PI: 7.9372

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000144.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.2	1.4e-31	55	110	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eCl+NhA+ +GghavDGCgEf+++ ge+g+++alkCaAC+CHRnFHR+e+e+ Itr_sc000144.1_g00010.1 55 KPRYRECLRNHAVGIGGHAVDGCGEFLAA-GEDGSVDALKCAACNCHRNFHRKETET 110 679***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-23	37	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.6E-29	57	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-28	57	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.049	58	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.53E-18	153	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-30	156	228	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-23	166	222	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEFEDQEEHK GEEGDIEMGA SYDSLGNSKA ATQPKMAPMS PGSGAGALAP LQMRKPRYRE 60 CLRNHAVGIG GHAVDGCGEF LAAGEDGSVD ALKCAACNCH RNFHRKETET AAAAALVHFG 120 YHPHPTGYLH HLPPPPHRPL ALPSTSGGGA YREEMMDDMN SGGASKKRFR TKFSQEQKDK 180 MFELAEKLGW RIQKHDEAAV QQLCNDYGVR RHVFKVWMHN NKHTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-24	165	224	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182466.1	1e-146	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	3e-74	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A484L1C3	6e-96	A0A484L1C3_9ASTE; Uncharacterized protein
STRING	evm.model.supercontig_55.54	6e-90	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-65	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]