PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000145.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 226aa MW: 23628.9 Da PI: 6.2554

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000145.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F +k L H++ H Itr_sc000145.1_g00005.1 46 FCCKYCDKKFCSKQALGGHQNAH 68 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.15E-5	45	74	No hit	No description
PROSITE profile	PS50157	11.094	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	68	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MAAEAIAKIE ELIKVQEVGE GDLQVGAAAG GQSGEDSPAP APGPDFCCKY CDKKFCSKQA 60 LGGHQNAHKM ERDMEKNAKK KNEPRGGFMD YGFLHPRFLC SPLASFPPLP GGGQANNWYQ 120 AAVAAAKPPC FLPGNPIPSP EIPAARPPFA FPFPPAVGNG SLLAQVSPPP AVIFPGRGNA 180 FPGGSVPANN SPVTPIRPAS MVINSNAMNT PEMNEEDGGL DLTLRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019186450.1	6e-68	PREDICTED: zinc finger protein STAMENLESS 1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13342	7	14