PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000146.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 152aa    MW: 15281 Da    PI: 10.5939
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000146.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like21.36e-071193654
                  G2-like 36 mkvkgLtlehvkSHLQkYR 54
                             m+v+gLt+ +v+SHLQk R
  Itr_sc000146.1_g00001.1  1 MNVPGLTRMQVASHLQKCR 19
                             9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-6120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MNVPGLTRMQ VASHLQKCRN DNWRAPEERR APPMSSASPA SGSGSRNEQR RFGTMPKLTA  60
AAAAAAAAAG GNSQQLGSTM SPEVQSSPSI TGAVTGDPSS QPPADRQYLA IGAAAAFVSK  120
LESSSPPSAA VQPAVVATAV GTFTATSGQA SI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176860.17e-55PREDICTED: two-component response regulator ORR26-like