PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000146.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 213aa    MW: 22032.2 Da    PI: 5.7737
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000146.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like20.79.5e-071193654
                  G2-like 36 mkvkgLtlehvkSHLQkYR 54
                             m+v+gLt+ +v+SHLQk R
  Itr_sc000146.1_g00002.1  1 MNVPGLTRMQVASHLQKCR 19
                             9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-5120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNVPGLTRMQ VASHLQKCRN DNWRAPEERR APPMSSASPA SGSGSRNEQR RFGTMPKLTA  60
AAAAAAAAAG GNSQQLGSIA SPEVQSSPSI TGAVTGDPSS QPPADRQYLA IGAAAAIVSK  120
LESSSPPSAA VQPAVVATAV GTFTATFNDV DYEYLIQGFS DNNARQASVA LQAPTHNNTS  180
SSEFNDKAGF NPVQNQEEKA QTSEMDIAKI SPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176860.13e-50PREDICTED: two-component response regulator ORR26-like