PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000150.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 330aa MW: 35725.5 Da PI: 9.9487

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000150.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.7	8.8e-32	259	316	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Itr_sc000150.1_g00016.1 259 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTMLIVTYEGEHNHS 316 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.0E-16	209	255	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-33	244	316	IPR003657	WRKY domain
PROSITE profile	PS50811	31.491	252	318	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-27	254	317	IPR003657	WRKY domain
SMART	SM00774	6.9E-38	257	317	IPR003657	WRKY domain
Pfam	PF03106	2.9E-27	259	315	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAVELMMSYR NVDVNGGGGE RIGFVKSLEE SSAVVKEAAS GFESVEEFIR LLSQGKKKQQ 60 GDREKAAMEI DVVADVAVNK FKKVIDLLGR TRTGHARFRR GPVASSPVME APADNKVYSP 120 TPIQQVPPPA SYDYSAAAHR YSAAAAAAPM TISFTCSPEI SRANSFNISS LTGETDSKPM 180 LSSSSAFQLT NLSQVSSAGK PPLSTSSLKR KCSSSENNLS GKCSGSSSRC HCSKRKKLRL 240 KRVTRVPAIS MKLSDIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERAVD 300 DPTMLIVTYE GEHNHSVSVA ETNGLILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	244	317	1	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00450	DAP	Transfer from AT4G24240	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU171676	1e-36	GU171676.1 Ipomoea batatas microsatellite Stv_Ipb_499 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183704.1	0.0	PREDICTED: probable WRKY transcription factor 7
Swissprot	Q9STX0	9e-96	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	M1CC13	1e-154	M1CC13_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400064256	1e-155	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	1e-73	WRKY DNA-binding protein 7