PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000153.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 341aa    MW: 38168.7 Da    PI: 8.2131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000153.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.8e-15265289226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ktelC+ +++tG+C+yG++C+FaHg
  Itr_sc000153.1_g00021.1 265 KTELCNKWQETGECPYGENCQFAHG 289
                              9***********************8 PP
2zf-CCCH19.61.6e-06302327126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykte Cr  +++  C+yG rC+F H+
  Itr_sc000153.1_g00021.1 302 YKTEVCRMVLAGDNCPYGHRCHFRHS 327
                              9**********55**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.16E-11260295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-18260296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882263291IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-8263290IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-12265289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-12297328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8298327IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065301329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLKESSSSNG VRASSNSRSA VGPNNFSSGG SSSPLYNCNP FLSPSSPRQL DLTDYSTNCY  60
SSLFAHSCKS PSDSSFDDAE AMATERRLFH ASFVLEYQQL YNRYTLCLAH LQESLKEVNA  120
LRQENESIRL ANADLVQRLS LLSQATIQNC LLSDFSNLGI GVRASPIRDT LTTESKPPNV  180
RPPPGVMEQH RLERRNQEQI PIPKSISVRS SGYLKMKAQD GSAGGQTSHR LNTQPLGQSQ  240
RVYVPGVKRE EEALEFEVFN QGMLKTELCN KWQETGECPY GENCQFAHGI KELRPVIRHP  300
RYKTEVCRMV LAGDNCPYGH RCHFRHSIAA DQDRPSSNHL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-21265327567Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182591.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like isoform X2
TrEMBLA0A328E1Z81e-152A0A328E1Z8_9ASTE; Uncharacterized protein
STRINGXP_009594882.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-69C3H family protein