PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000154.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 300aa    MW: 33322.5 Da    PI: 4.5741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000154.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67e-112252651055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              rrRR++iN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Itr_sc000154.1_g00015.1 225 RRRREKINERLRILQSLVPNG-----TKVDISTMLEEAVHYVKFLQ 265
                              9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14216281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-13220274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-12224269No hitNo description
PfamPF000104.4E-8225265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
METVGAAAFF DEEWESSLSN LFTVENPDFM LHLQGDYNGG AGFEAPSTFW QAVEASNNGG  60
GGSHHDSFAF DQSDESMKFF VISQKEFDTS APVFDPDEVI RDISDEVAEE QTIRNGNPKK  120
RTRGVSRDGQ KNKRNNANSK TKKNPKNMTE NSNGEEEEEE KYDSNTMSAN NAVQSSSCCS  180
SEDDSTASRD LNNPGSTITT TTTNSNGKTR ASRGAATDPQ SLYARRRREK INERLRILQS  240
LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDLWMYA PIAYNGMDIG LYQKMLLPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229RRRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152414.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK05e-58BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A2R6QY705e-67A0A2R6QY70_ACTCH; Transcription factor bHLH84 like
STRINGXP_009629598.14e-68(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.15e-40ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]