PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000156.1_g00028.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 351aa MW: 37718.6 Da PI: 8.737

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000156.1_g00028.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.5e-39	57	116	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Itr_sc000156.1_g00028.1 57 QQPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 116 7899*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	58	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-24	64	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MVGSNCDEKM AVISSTANEW PIHQKNQIDG RSLMGSRVME KPMNGQDQAM PPPPPNQQPL 60 KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRIKRPSA 120 PSVSSSSATQ DHHISAPSSS APNLQVQAQM DHHINPLLYG LPTSTPSELG LSFPRLFSSR 180 VSNFEGTNIP GYDHPHHHMG LGFSSSSNSG LLGGENGFPN NNTSNNSLLS SFHGGGLSCS 240 SSSSSSSSTL ASLIASSLHQ GANNNGFHGL SPYGEMQVGN GNMGPKEVKM EGNWNNNNNN 300 TNSLSSHYQI MNQTAQINTS SSDNNPSSLP WNNGGSWFDP SNMGSSVPSI L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MVGSNCDEKM AVISSTANEW PIHQKNQIDG RSLMGSRVME KPMNGQDQAM PPPPPNQQPL  60
KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRIKRPSA  120
PSVSSSSATQ DHHISAPSSS APNLQVQAQM DHHINPLLYG LPTSTPSELG LSFPRLFSSR  180
VSNFEGTNIP GYDHPHHHMG LGFSSSSNSG LLGGENGFPN NNTSNNSLLS SFHGGGLSCS  240
SSSSSSSSTL ASLIASSLHQ GANNNGFHGL SPYGEMQVGN GNMGPKEVKM EGNWNNNNNN  300
TNSLSSHYQI MNQTAQINTS SSDNNPSSLP WNNGGSWFDP SNMGSSVPSI L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170254.1	1e-180	PREDICTED: dof zinc finger protein DOF1.4 isoform X2
TrEMBL	A0A314L1I6	4e-78	A0A314L1I6_NICAT; Dof zinc finger protein dof1.4
STRING	EOY28202	5e-78	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-32	Dof family protein