PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000157.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 177aa    MW: 19925.4 Da    PI: 7.1134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000157.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.9e-191569256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +++ ++t++q++ Le  F+ n++++a+++ +LA++lgL+ rq+ +W+qN+Ra+ k
  Itr_sc000157.1_g00005.1 15 CHKKRLTQDQVRLLEGSFNVNNKLDADSKSQLANQLGLPPRQIAIWYQNKRARSK 69
                             567789***********************************************99 PP
2HD-ZIP_I/II108.35.4e-3516107293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +k+rl+++qv+lLE sF+ ++kL+ + K++la++Lgl prq+a+W+qn+RAR k++ lE+d++aL++++d++ ++nerL++eve+L
  Itr_sc000157.1_g00005.1  16 HKKRLTQDQVRLLEGSFNVNNKLDADSKSQLANQLGLPPRQIAIWYQNKRARSKSQSLEVDHKALHERLDEVLSDNERLRREVERL 101
                              69************************************************************************************ PP

              HD-ZIP_I/II  88 reelke 93 
                              ree+++
  Itr_sc000157.1_g00005.1 102 REEVQK 107
                              ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.5E-151475IPR001356Homeobox domain
SuperFamilySSF466897.1E-171579IPR009057Homeodomain-like
PfamPF000467.2E-161669IPR001356Homeobox domain
CDDcd000863.17E-151672No hitNo description
PROSITE profilePS5007115.1271771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-181876IPR009057Homeodomain-like
PRINTSPR000312.8E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000312.8E-55167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDNFQSLTRK PLFKCHKKRL TQDQVRLLEG SFNVNNKLDA DSKSQLANQL GLPPRQIAIW  60
YQNKRARSKS QSLEVDHKAL HERLDEVLSD NERLRREVER LREEVQKAQE MLQLATAAAT  120
PYSSLSLSCS SCDEAAGSLG LLHGSSKELY ACLLDDHESQ FGTSGDLHNF FAPPALS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162286.12e-96PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1U7YMN85e-67A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like
STRINGXP_009800499.19e-68(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.19e-28homeobox protein 52