PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000157.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 236aa    MW: 26786.9 Da    PI: 5.2546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000157.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-2077128256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrd      k +r++lg+f+taeeAa a+++a+++++g+
  Itr_sc000157.1_g00015.1  77 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAAMAYDKAALRIRGH 128
                              8********.**********3...2234**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-3076135No hitNo description
Gene3DG3DSA:3.30.730.105.9E-3276136IPR001471AP2/ERF domain
PROSITE profilePS5103224.02677135IPR001471AP2/ERF domain
PfamPF008473.1E-1577128IPR001471AP2/ERF domain
SMARTSM003803.2E-3677141IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2477136IPR016177DNA-binding domain
PRINTSPR003671.7E-117889IPR001471AP2/ERF domain
PRINTSPR003671.7E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGSVEREKES ASSSDAILEN VWANFIAKNE SKESREDYEN WDEILHRLPS LEEELQASIN  60
GGPKSSSERV KVERRKHYRG VRRRPWGKYA AEIRDSSRKG ARVWLGTFDT AEEAAMAYDK  120
AALRIRGHKA YLNFPLQSTV ADARGICCNP NHELSGNCSF IGSCFGHGEI TCDSRKRVGR  180
EWDIFEDSSC MITQPAQKIK MQSQTCLEEP LETSFSDIVE FQDLGSDYLE YLLLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2976137162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17383RRKHYRGVRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162287.11e-134PREDICTED: ethylene-responsive transcription factor ERF105
SwissprotO495157e-36ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A1S4BF422e-66A0A1S4BF42_TOBAC; ethylene-responsive transcription factor ERF091-like
STRINGXP_009776179.19e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-28ERF family protein