PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000162.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 256aa    MW: 29117.2 Da    PI: 5.0897
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000162.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-1849102356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++ +eq++ Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa+ k
  Itr_sc000162.1_g00021.1  49 KKRRLAPEQVRFLERSFEVENKLEPERKVQLANQLGLQPRQVAIWFQNRRARCK 102
                              455899**********************************************99 PP
2HD-ZIP_I/II131.82.5e-4248139192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl+ eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR ktkq+Ekdy++Lk++yd+lk+++++L+k++++
  Itr_sc000162.1_g00021.1  48 EKKRRLAPEQVRFLERSFEVENKLEPERKVQLANQLGLQPRQVAIWFQNRRARCKTKQIEKDYDSLKATYDKLKADHDSLSKQNQT 133
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              Lr+e++
  Itr_sc000162.1_g00021.1 134 LRNEVR 139
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.69844104IPR001356Homeobox domain
SuperFamilySSF466896.42E-1945106IPR009057Homeodomain-like
SMARTSM003894.8E-1947108IPR001356Homeobox domain
PfamPF000461.1E-1549102IPR001356Homeobox domain
CDDcd000861.02E-1649105No hitNo description
Gene3DG3DSA:1.10.10.606.2E-1951112IPR009057Homeodomain-like
PRINTSPR000317.1E-67584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000317.1E-684100IPR000047Helix-turn-helix motif
PfamPF021832.6E-16104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDSDNMSTIN TSVWISNTDP SVHEDCGEEM VKGGNCNEEC EGCFYQGEKK RRLAPEQVRF  60
LERSFEVENK LEPERKVQLA NQLGLQPRQV AIWFQNRRAR CKTKQIEKDY DSLKATYDKL  120
KADHDSLSKQ NQTLRNEVRL LTDKLLIQEQ QQGNPKSETN DANGPLKQPS CGGVVSTAKK  180
GENFPMVVSK HENGSSDSSH VLDSDFSQDN EDDDSLKRSL FQPFLKLENH GFQTQPSSCN  240
LGFSLEDHTT SSWLWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104RRARCKTKQ
2213218DSLKRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164970.11e-157PREDICTED: homeobox-leucine zipper protein HAT7 isoform X1
SwissprotQ6K4982e-41HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH372e-41HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A2G9HHP02e-65A0A2G9HHP0_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRINGSolyc05g006980.2.16e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-42homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]