PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000164.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 685aa    MW: 74063.6 Da    PI: 6.7135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000164.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08282302526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f + GtC  Gd C FaHg
  Itr_sc000164.1_g00006.1 282 PCPEFKK-GTCAKGDACEFAHG 302
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.44E-1365174IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-1367200IPR020683Ankyrin repeat-containing domain
SMARTSM002480.07889119IPR002110Ankyrin repeat
PROSITE profilePS5029713.76189197IPR020683Ankyrin repeat-containing domain
PfamPF136374.0E-590136No hitNo description
CDDcd002041.75E-1091175No hitNo description
SMARTSM002480.051124156IPR002110Ankyrin repeat
PROSITE profilePS5008810.392124159IPR002110Ankyrin repeat
SMARTSM003567.4E-5277303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.812277304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5282304IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5282302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4309340IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.366312336IPR000571Zinc finger, CCCH-type
SMARTSM0035619312335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDDVSELSLV VVNLQGLMCS GSKAKLCSFD LDMEKKNGVL CKSCSKLLEL SATDDVAGFI  60
CEVEEKGCDV NELSLWYGRK IGSKKMGLEE RTPLAIASMY GSTGVLKYIL GTGKVDVNMA  120
CGSDGATALH CVVAGGSDSS LEVAKVLVGA NADVNALDAN GNKPGDLIAS FQKLSSNLKR  180
RTLGLLLKGG EVELGDEEEE QVKAVAPLFA KEGCEKKEYP IDTSLPDINT GIYGTDEFRM  240
YSFKVKPCSR AYSHDWTECP FVHPGENARR RDPSKYTYTC VPCPEFKKGT CAKGDACEFA  300
HGVFESWLHP AQYKTRLCKD ETGCSRKVCF FAHKPEELRP LYASTGSAIP SPKSGSVSSM  360
DTATLGPLAL GSSLLMPTTS TPPMSPTVSC SSPMGGNTWQ NKMNFIPPAL QLSGSRLKTA  420
LNARDLDPDM ELLSLESIRT QQQQRQQLIE EMAGLSSPSR WNGDYNRLGD LKPTNLDDVF  480
GSLDSSLSHL QGLSPKVARN SSSQLQSPTG LQIRQNMNQL RASYPSNISS SPARKPSTYG  540
YDSSAAVAAA VMNSRSAAFA KRSHSFIDRG GVIPRSSNSP PLMTSKMSDW GSPDGKLDWG  600
FNGEELNKLK KSASFATRNG SPASTRASFL PSHSDEPDVS WVHSLVKDVS SGSAGLYDSE  660
QKRRVHDSVP SWIDQMYIDQ EQVVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151175.10.0PREDICTED: zinc finger CCCH domain-containing protein 47
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A3Q7HFW60.0A0A3Q7HFW6_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein