PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000165.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 247aa    MW: 26046.4 Da    PI: 8.6589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000165.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.2e-095883227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             kt+lC  +     Ck+Gd+C+FaHg+
  Itr_sc000165.1_g00018.1 58 KTRLCTKYNTAEGCKFGDKCHFAHGE 83
                             8***********************96 PP
2zf-CCCH37.15.2e-12214238126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykt+lC++f + G C +GdrC+FaHg
  Itr_sc000165.1_g00018.1 214 YKTKLCDNFVK-GSCTFGDRCHFAHG 238
                              9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.437119IPR000571Zinc finger, CCCH-type
PfamPF146080.95616No hitNo description
SuperFamilySSF902294.32E-85586IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-135686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4975684IPR000571Zinc finger, CCCH-type
SMARTSM003560.00485683IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-65883IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.09E-15119195IPR004088K Homology domain, type 1
SMARTSM003222.1E-11124194IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.2E-16125195IPR004088K Homology domain, type 1
PROSITE profilePS5008414.508125189IPR004088K Homology domain, type 1
PfamPF000135.0E-11127191IPR004088K Homology domain, type 1
CDDcd001059.26E-15127189No hitNo description
Gene3DG3DSA:4.10.1000.108.0E-17211243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-9212243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.962213240IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-8213239IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9214238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MHTSGCQFGE SCHFLHYVPG GLKAVTQMLG NNPALPVATR NSMAMPSFPD ASSPTGVKTR  60
LCTKYNTAEG CKFGDKCHFA HGEWELGRSA VPSHEDPRGM GHASRFGRPE PSQAGLGAAA  120
SFGSSATAKI SIDASLSGAI IGKGGVNSKQ ICRVTGAKLS IRDNESDPNL KNIELEGTID  180
QIQQASQMVR ELIATVSSNA KSMKGPRSAP ANNYKTKLCD NFVKGSCTFG DRCHFAHGAE  240
ELRGGGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152113.11e-180PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R05e-90C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A328DNT11e-142A0A328DNT1_9ASTE; Uncharacterized protein
TrEMBLA0A484LST31e-142A0A484LST3_9ASTE; Uncharacterized protein
STRINGXP_009803026.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-59C3H family protein