PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000173.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 212aa MW: 22369.9 Da PI: 7.6848

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000173.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.4	2.7e-37	23	80	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+l qPryfCk+CrryWt+GGalrnvPvGg++rk ++ Itr_sc000173.1_g00008.1 23 EKLACPRCDSTNTKFCYYNNYNLCQPRYFCKSCRRYWTRGGALRNVPVGGATRKPSSK 80 7899**************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-31	24	78	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-22	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSSEGGERRP ARVGGVAAEA EGEKLACPRC DSTNTKFCYY NNYNLCQPRY FCKSCRRYWT 60 RGGALRNVPV GGATRKPSSK KRSRAVRSGR PARSPAPMIV GIGTGSGREV NLNKAVPEPE 120 TESLSLAPVG GGGVEFAPLG EYGLGLEPSG LHDEFGLGLG LCDWPAEPVA GGNGSEATNV 180 DGGVAATSWN NDDAWQIDDW PELSISAPGR KP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152947.1	1e-111	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A328DT18	3e-59	A0A328DT18_9ASTE; Uncharacterized protein
TrEMBL	A0A484KUA6	3e-59	A0A484KUA6_9ASTE; Uncharacterized protein
STRING	XP_009788291.1	1e-39	(Nicotiana sylvestris)
STRING	XP_009592897.1	8e-40	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	2e-31	Dof family protein