PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000173.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 235aa    MW: 25905.7 Da    PI: 8.4782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000173.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-173681147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEd++l ++v+++G ++W+  ++++  gR++k+c++rw + 
  Itr_sc000173.1_g00015.1 36 KGPWSAEEDKILTRLVERYGARNWSMMSKYIK-GRSGKSCRLRWCNQ 81
                             79*****************************9.***********985 PP
2Myb_DNA-binding53.45.9e-1790132347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++++ Ede ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ 
  Itr_sc000173.1_g00015.1  90 PFSAAEDEAILAAHSRYGNR-WATIARLLP-GRTDNAVKNHWNST 132
                              79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9243182IPR017930Myb domain
SuperFamilySSF466899.35E-3134129IPR009057Homeodomain-like
SMARTSM007176.5E-153584IPR001005SANT/Myb domain
PfamPF002493.6E-163681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-233789IPR009057Homeodomain-like
CDDcd001675.35E-143880No hitNo description
PROSITE profilePS5129424.29283137IPR017930Myb domain
SMARTSM007175.2E-1587135IPR001005SANT/Myb domain
CDDcd001678.51E-1290133No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2290136IPR009057Homeodomain-like
PfamPF002491.0E-1390132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGAFHRWSSA SSTSSDSCSS GSSFSAGGGN QAEKIKGPWS AEEDKILTRL VERYGARNWS  60
MMSKYIKGRS GKSCRLRWCN QLSPAVQHRP FSAAEDEAIL AAHSRYGNRW ATIARLLPGR  120
TDNAVKNHWN STLKRRHKQQ SQPSDLPMTV TDVNVNVNSP GSTEFVTEKS PGADTWDDEF  180
DPMTALTLAP PGMGGDSRPP ESLPAVFWDA MKDVIAREVR DYITSSFSEA STSYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40331361104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152341.11e-141PREDICTED: transcriptional activator Myb-like isoform X2
TrEMBLA0A162A6R02e-92A0A162A6R0_DAUCS; Uncharacterized protein
STRINGXP_009620130.11e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-56myb domain protein 73