PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000174.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 347aa MW: 38023.3 Da PI: 5.964

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000174.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.7	1.4e-09	145	193	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + Itr_sc000174.1_g00008.1 145 KRAKRILANRQSAARSKERKARYMSELERKVQTLQTEATTLSAQLTLFQ 193 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-16	141	205	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	143	206	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-8	145	199	No hit	No description
Pfam	PF00170	3.1E-8	145	193	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	145	196	No hit	No description
CDD	cd14703	1.86E-22	146	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MQDPSNPKPT ANQTPQFPSA LWPPHHRRAH SEVNFRLPED LDLASDPFDA APAGSFEEIG 60 SEDDLFSTFM DIEKLGAGSM SAAAGMDNAG AGGAADDGGM ASNRPRHRHS NSVDSSSLLL 120 SESAIEAKKA LAPEKLAELW TIDPKRAKRI LANRQSAARS KERKARYMSE LERKVQTLQT 180 EATTLSAQLT LFQRDTTGLS NENTELKLRL QAMEQQAQLR DALNEALKQE VERLKVATGD 240 ITSSSDAYNL GMQHIPYNQS AFFSHQPQPG PRESQNMKMP QFHPLQPCSS APHYPVLLAS 300 QAQGLRDTMQ QQDPLGHFQS LDISSRGSHL MNSEANSIPA TESNIAL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MQDPSNPKPT ANQTPQFPSA LWPPHHRRAH SEVNFRLPED LDLASDPFDA APAGSFEEIG  60
SEDDLFSTFM DIEKLGAGSM SAAAGMDNAG AGGAADDGGM ASNRPRHRHS NSVDSSSLLL  120
SESAIEAKKA LAPEKLAELW TIDPKRAKRI LANRQSAARS KERKARYMSE LERKVQTLQT  180
EATTLSAQLT LFQRDTTGLS NENTELKLRL QAMEQQAQLR DALNEALKQE VERLKVATGD  240
ITSSSDAYNL GMQHIPYNQS AFFSHQPQPG PRESQNMKMP QFHPLQPCSS APHYPVLLAS  300
QAQGLRDTMQ QQDPLGHFQS LDISSRGSHL MNSEANSIPA TESNIAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019200341.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-108	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8GWN3	1e-170	A0A1U8GWN3_CAPAN; Transcription factor RF2b
TrEMBL	A0A2G2Z8K9	1e-170	A0A2G2Z8K9_CAPAN; transcription factor RF2b-like
STRING	PGSC0003DMT400070968	1e-160	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-89	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]