PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000175.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 303aa    MW: 33363 Da    PI: 6.302
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000175.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.63e-19122178158
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                              +dDgy+WrKYGqK++ ++++pr    Ct++   +C+++k+v+  +e+p +  +tY+g+H++
  Itr_sc000175.1_g00017.1 122 VDDGYAWRKYGQKVILNTPYPR----CTHKfdqKCQATKQVQMIRENPALYRTTYNGNHTC 178
                              59*****************997....77777779*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-20110178IPR003657WRKY domain
PROSITE profilePS5081116.8117176IPR003657WRKY domain
SuperFamilySSF1182906.15E-19118178IPR003657WRKY domain
SMARTSM007747.4E-31122180IPR003657WRKY domain
PfamPF031063.9E-19123178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAHSSPENSS ASRKRAVDGL ILGRNLTCQL REVLKNTSDE HGPPSKVVAE DLVAKILESF  60
NEGISVIGSM DSDEVSQPPC DGRKSEDSSG SCKTTSALKD GRGCYKRRKT CETLIKDSQT  120
LVDDGYAWRK YGQKVILNTP YPRCTHKFDQ KCQATKQVQM IRENPALYRT TYNGNHTCLN  180
FQKYPQIIVD STAHGDSSFL LCFGQNGQSN KEVQNPTLIK QENNKQEFAE NLYHSHIQSS  240
SSGCCLPSSD DRPMSSARWG PAASSGSEYG DVNSSGCTHD DLGMQMMGNV DVDDFTLGFL  300
ADF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-17122178868OsWRKY45
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186254.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3X9M45e-75A0A1S3X9M4_TOBAC; probable WRKY transcription factor 70
STRINGXP_009597703.18e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-37WRKY DNA-binding protein 70