PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000178.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 290aa    MW: 32412 Da    PI: 8.3171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000178.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-1382133155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+ lP++   ++++ + a+i+  +++++k+L+
  Itr_sc000178.1_g00028.1  82 QRMTHIAVERNRRRQVNDYLAVLRSFLPPS---YAQRGDQASIVGGTINFVKELE 133
                              79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.60E-1280137No hitNo description
PROSITE profilePS5088814.77381132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-1581152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1182148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1082133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-887138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAMGGLLDCY GGFEEDKLSC EALSSVEQTA SNGCWDYSPP KVLPVEYSPA VAPAETAAAL  60
GRPRKRRRAA KSSKKKEDIE TQRMTHIAVE RNRRRQVNDY LAVLRSFLPP SYAQRGDQAS  120
IVGGTINFVK ELEQLLQFLE VHKQLKNNQI SSSNYPNNNN NSHYPFSTFF TFPQYSTPKT  180
HSPTAAAAST APQKLSTVAD VEVAMVESHA SVKVLSKKQP KQLVKMVKWF HAMSLTVLHL  240
NVTTIHPMVL YSFSLKVEDD CQLMSVNEIA TAVHEMVAMI QEDMMREDTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367RKRRR
28293RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177205.11e-174PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T45e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1J6HUB17e-97A0A1J6HUB1_NICAT; Transcription factor bhlh96
TrEMBLA0A1U7X3T89e-97A0A1U7X3T8_NICSY; transcription factor bHLH96-like
STRINGXP_009784356.12e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]