PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000181.1_g00043.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 410aa    MW: 45322.7 Da    PI: 6.7362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000181.1_g00043.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.22.5e-202673148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++lvd+++++G g+W+++++  g++R++k+c++rw +yl
  Itr_sc000181.1_g00043.1 26 KGPWTPEEDKKLVDYIRKHGHGSWRAVPKLAGLNRCGKSCRLRWTNYL 73
                             79********************************************97 PP
2Myb_DNA-binding54.62.6e-1779124148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++ +eE++l+++++  lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc000181.1_g00043.1  79 RGKFEEEEEQLIIKLHSVLGNK-WSAIAMRLP-GRTDNEIKNHWNTHL 124
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5742173IPR017930Myb domain
SuperFamilySSF466898.44E-3223120IPR009057Homeodomain-like
SMARTSM007171.2E-162575IPR001005SANT/Myb domain
PfamPF002495.3E-192673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-252780IPR009057Homeodomain-like
CDDcd001672.49E-132873No hitNo description
PROSITE profilePS5129428.19974128IPR017930Myb domain
SMARTSM007172.9E-1678126IPR001005SANT/Myb domain
PfamPF002498.1E-1679124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2681128IPR009057Homeodomain-like
CDDcd001672.31E-1281124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MRRPSSPTLS GSSGGRGDEN AGGVKKGPWT PEEDKKLVDY IRKHGHGSWR AVPKLAGLNR  60
CGKSCRLRWT NYLRPDIKRG KFEEEEEQLI IKLHSVLGNK WSAIAMRLPG RTDNEIKNHW  120
NTHLRKRLLQ MGIDPVTHRP RTDINFIDAL ANLPQLLVAA ANMGNNSNVA NPLWDSINAL  180
RLCSDAAQIA NELQLLQNFM ALQLQLQGSV NNTTNEAQNQ IPELATQFGS CNQLLDHLAL  240
LNPQLQGGLC NLGSSYNFSR LPPNISCSGS VATSSTSQNS EIQIHHPGII SNETNQGQTI  300
NSNVSRINDD SNKLMTNAFT VSSSSPLNVP SGEDIPSNPI FPTLIPASPF PENPSSSIDW  360
ETNKEKYTIS ANLKHDIPNH VPNATTTFEA WRDIKVDDDE ATDSYWQDIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30261287108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019149708.10.0PREDICTED: transcription factor MYB76-like
TrEMBLA0A061EYD81e-99A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101101e-100(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-79myb domain protein 9