PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000184.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 708aa    MW: 78654.2 Da    PI: 5.2029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000184.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-08138160427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                              ++C ff++ G+C  GdrC+F Hgp
  Itr_sc000184.1_g00016.1 138 VPCIFFQK-GICLKGDRCPFLHGP 160
                              79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.3663665IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-113791No hitNo description
SMARTSM003560.0133764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2356793IPR000571Zinc finger, CCCH-type
SMARTSM003560.126992IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197134161IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5136159IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5138160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4139161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDGSHRPNPQ APPPPAGAAA AAAAPPPMTS AEEEAIKKNT DCVYFLASPL TCKKGSECEY  60
RHSDNARLNP RDCWYWLNGN CLNPKCAFRH PPLDGLLGNQ APNPVEPFMP PVQAPFMPPV  120
QAAAPAAQVP YFANKQGVPC IFFQKGICLK GDRCPFLHGP NTLINKAPPQ KQGVLPTTEV  180
SSKKTFGGLE KCTQEKNTPQ NNVLKTGELP PVAKPVAKEG PALVKNHFLV DKNMAPISVI  240
DNEPLKYKPI SVPPNGNPVG RSSQMQHQHG FDDPSMHNKD DEISREASPG FDVLVDDELR  300
DSDYYPVEDQ YGGAGDHERS EYDIDPAADY SIGDIDQDMY RDAHGYDSYA HYGWEQRGAS  360
SERKSGRSSH PERRYGNAGS SDQFSESDLR HRLSKHRRVN GLRSVISHEQ TRERHVEEQS  420
YRSSRRESNN LSSHESSLSN RLRGRIKIPG RSSSPTDVAE NRSDREMDRG RDRGRFSHGR  480
PQVPSHQGRL QDRIKGRVQE DLNYVGRNIR GPPLRGDMLS ETNINFAGPK SLAELKGKKG  540
GIEGNGPQSL GKRKHQKYDD QLQSGGDLSF EGPKPLEEIL KRKRRAGENE DYNQQERTTT  600
TEPYSHKNEA DHGAQKEDFQ PPSGNNTGAL ENKSAEDLEV EDGMLADEGA EYQDGEGYDP  660
QDGDYNYEQV DGEDVNLEEA ENGDPDEEYL EDDDDADDFA KKMAVVFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191404.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A328EDS10.0A0A328EDS1_9ASTE; Uncharacterized protein
STRINGXP_009759890.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633