PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000185.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 201aa    MW: 23366.4 Da    PI: 9.9699
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000185.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.29.6e-2171292127
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 
                              p G+rF+Ptd el+  +L+  v g+  ++    i e ++y+  ePw+L    ++ee+  yf +k +kk+++++r +r++   +g+W
  Itr_sc000185.1_g00020.1   7 PSGYRFRPTDIELL-GFLALFVLGSLpFSW-YPIMERNLYSGdEPWQLF--GNSEERVRYFITKLKKKNPRNSRYRRSIGdgKGTW 88 
                              89************.788888877762555.6699999998659****6..34566788******************87655899* PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                              ka+ k k++ + +g+ +g k++L + ++   + +  +W+m+ey 
  Itr_sc000185.1_g00020.1  89 KAQDKGKAISR-SGKIIGYKRSLRYENK--GSEHDGQWLMKEYY 129
                              *********99.999*********9843..333579*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-293153IPR003441NAC domain
PROSITE profilePS5100527.8616153IPR003441NAC domain
PfamPF023657.9E-147128IPR003441NAC domain
PROSITE profilePS502708.94772170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGQAKIPSGY RFRPTDIELL GFLALFVLGS LPFSWYPIME RNLYSGDEPW QLFGNSEERV  60
RYFITKLKKK NPRNSRYRRS IGDGKGTWKA QDKGKAISRS GKIIGYKRSL RYENKGSEHD  120
GQWLMKEYYF PDKVRENLEV SLRDTVLCRI KRKQNWDNTN HNESTIAEGI RDIIGDFTPK  180
LEPSESDTTR TTLTLALSTD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-16115512167NO APICAL MERISTEM PROTEIN
1ut4_B5e-16115512167NO APICAL MERISTEM PROTEIN
1ut7_A5e-16115512167NO APICAL MERISTEM PROTEIN
1ut7_B5e-16115512167NO APICAL MERISTEM PROTEIN
4dul_A5e-16115512167NAC domain-containing protein 19
4dul_B5e-16115512167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160621.11e-103PREDICTED: NAC domain-containing protein 55-like isoform X1
TrEMBLM1AA797e-43M1AA79_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000182011e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.18e-18NAC domain containing protein 3