PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000187.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25277 Da    PI: 8.3391
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000187.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.2e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien   rqvtfskRr+g+lKKA+ELS+LCdaevavi+fs tg+lye++s
  Itr_sc000187.1_g00027.1  9 KKIENINSRQVTFSKRRAGLLKKAKELSILCDAEVAVIVFSGTGRLYEFAS 59
                             68***********************************************86 PP
2K-box66.97e-239718116100
                    K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                               lq e++ L++e+ ++ + + +++G+dLe L++keLq+Le+qL +++ +++++K+++l+eq+e+++ +e++++ en+ Lr+++ee
  Itr_sc000187.1_g00027.1  97 DLQPEVNALRAELAKMHQLHCRMMGKDLEGLNFKELQHLEHQLTEGILTVKDTKEQVLFEQLEKSRLQEEKIKLENQVLREQIEE 181
                              6899******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.352161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31275IPR002100Transcription factor, MADS-box
CDDcd002653.01E-41271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.80195185IPR002487Transcription factor, K-box
PfamPF014861.4E-1696179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGKIEIKK IENINSRQVT FSKRRAGLLK KAKELSILCD AEVAVIVFSG TGRLYEFASS  60
SMEHVLAKYN KVPTTTEPAK VEIAAEHDLQ PQVFKHDLQP EVNALRAELA KMHQLHCRMM  120
GKDLEGLNFK ELQHLEHQLT EGILTVKDTK EQVLFEQLEK SRLQEEKIKL ENQVLREQIE  180
ELRRSSRPYQ ENHLPEKKNF LASLSAVCDC RSKREGNSDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21169169MEF2C
5f28_B1e-21169169MEF2C
5f28_C1e-21169169MEF2C
5f28_D1e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166137.11e-145PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ9M2K82e-58AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A484L6C45e-89A0A484L6C4_9ASTE; Uncharacterized protein
STRINGXP_009591403.11e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-51AGAMOUS-like 18