PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000189.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 304aa    MW: 34088.5 Da    PI: 8.2632
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000189.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP96.52.4e-302392278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                             C v+gC+adls+++eyhrrhkvCe hsk+++v+v g+e r       fh+l+efDe+krsCr+rL++hn+rrrk+q+
  Itr_sc000189.1_g00002.1 23 CLVDGCNADLSQCREYHRRHKVCELHSKTAKVTVGGRELR-------FHSLTEFDEGKRSCRKRLDGHNKRRRKPQP 92
                             ************************************9975.......8**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-231777IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.172090IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.26E-292195IPR004333Transcription factor, SBP-box
PfamPF031102.0E-202389IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESSSSSSKR AKAPGNAVQV ANCLVDGCNA DLSQCREYHR RHKVCELHSK TAKVTVGGRE  60
LRFHSLTEFD EGKRSCRKRL DGHNKRRRKP QPDNLNKSSG MLYSPSQQGA KLLQFGSSHQ  120
MFPSASAWSS GVIQAENDMM LYNNQQHFNY IDRQKTFQDH HDYKEVNQFQ FMQGGSDRIF  180
PEASISQPHI NMNNSAASGN TISNSSRQRV FHGGYDDSDH RALSLLSSAP AVTREIGFSH  240
ALQPDPTNTP HQAQPLPHTL HYEGLSSHYS FSQEPETKPA GVSDEMLQSA PDSSSHQTLT  300
FRWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1923891184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17289KRSCRKRLDGHNKRRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199799.11e-147PREDICTED: squamosa promoter-binding-like protein 16 isoform X2
TrEMBLA0A314KI711e-112A0A314KI71_NICAT; Squamosa promoter-binding-like protein 16
STRINGXP_009764314.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-39SBP family protein