PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000189.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 202aa MW: 22535.3 Da PI: 9.8893

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000189.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105	4.1e-33	123	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+++fprsYY+Ct++gC+vkk+v+r ++d++vv++tYeg H h+ Itr_sc000189.1_g00003.1 123 LDDGYRWRKYGQKSVKNNKFPRSYYKCTHQGCNVKKQVQRLSKDETVVVTTYEGMHSHP 181 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.1E-34	108	181	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	115	182	IPR003657	WRKY domain
PROSITE profile	PS50811	30.262	118	183	IPR003657	WRKY domain
SMART	SM00774	1.4E-38	123	182	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	124	181	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEAYPTLFGS SSSSPLRLSP HLSLASMGNH EYIKDDGAQG DLQFHGGGKG MKGLLEQLKR 60 AEAAAAAPTS DMKSHDSSIS TNSLTAAESE AKSSSSGYKI KKGEKKIRKP RYAFQTRSQV 120 DILDDGYRWR KYGQKSVKNN KFPRSYYKCT HQGCNVKKQV QRLSKDETVV VTTYEGMHSH 180 PIEKSTDNFE HILSQMQIYA SF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	113	180	7	74	Probable WRKY transcription factor 4
2lex_A	1e-28	113	180	7	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199847.1	1e-123	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A2P6R0A5	8e-73	A0A2P6R0A5_ROSCH; Putative transcription factor WRKY family
STRING	XP_009343134.1	4e-73	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	5e-57	WRKY DNA-binding protein 75