PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000189.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 254aa MW: 27034.2 Da PI: 10.2441

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000189.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.9	1.8e-38	42	129	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai+++tgt++++as+ a++ s+s++ s Itr_sc000189.1_g00008.1 42 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPAIIAATGTGTIPASALaAAAEASVSEQGTS 127 789******************************************************************88873333333333333 PP TCP 87 sg 88 + Itr_sc000189.1_g00008.1 128 VS 129 32 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-32	47	136	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.791	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAGNKPAEIK DLQILSSHNT KDQPQPQPQP QPQENNKKLQ VAPKRSSNKD RHKKVDGRGR 60 RIRMPALCAA RIFQLTRELG HKTDGETVQW LLQQAEPAII AATGTGTIPA SALAAAAEAS 120 VSEQGTSVSA SLHEFAGIRS HWAVMGGANN LSRPQISSAA AAAWPSVPGF APGFSGNQIL 180 NSIPKFGFHG FEFPNPGTFT QHLPGLELGL SQEGRIGSVN FQAVPQSYQM GTGNNPMNQQ 240 HPGTGRDESQ GPGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199844.1	1e-144	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	7e-61	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A068UY75	1e-89	A0A068UY75_COFCA; Uncharacterized protein
STRING	EOX99738	4e-80	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	5e-59	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]