PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000190.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 257aa    MW: 26763.3 Da    PI: 8.8249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000190.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-085984227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             kt+lC+ +     Ck+Gd+C+FaHg+
  Itr_sc000190.1_g00004.1 59 KTKLCNKYNSAEGCKFGDKCHFAHGE 84
                             89**********************96 PP
2zf-CCCH35.41.8e-11224248126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykt+lC++f + G C +G+rC+FaHg
  Itr_sc000190.1_g00004.1 224 YKTKLCDNFTK-GSCTFGERCHFAHG 248
                              9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.578123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4721IPR000571Zinc finger, CCCH-type
PfamPF146080.66920No hitNo description
Gene3DG3DSA:4.10.1000.102.8E-135787IPR000571Zinc finger, CCCH-type
SMARTSM003560.00135784IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-85787IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6765785IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-65984IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.92E-14124199IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.2E-15128198IPR004088K Homology domain, type 1
SMARTSM003226.5E-12128198IPR004087K Homology domain
PROSITE profilePS5008414.068129193IPR004088K Homology domain, type 1
PfamPF000132.7E-11131195IPR004088K Homology domain, type 1
CDDcd001057.57E-14131193No hitNo description
Gene3DG3DSA:4.10.1000.107.6E-16220253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-9221253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389223250IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7223249IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9224248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MHVNALTAGC PFGESCHFLH HVPGGYNAVA QIMNLAPAPN SRNMPPPPIS NGTSGAAVKT  60
KLCNKYNSAE GCKFGDKCHF AHGEWEIGKP IMPGHEDPRA MGPGPLPGRF GGRMEQQPVS  120
GPAASFGSSA TAKISVDASL AGAIIGKSGV NSKQICRQTG VKLSIRDHET DKTLKNIELE  180
GTFEQISQAS AMVRELISSL GSVGGPGRAA PAAHGGPASH SSNYKTKLCD NFTKGSCTFG  240
ERCHFAHGAA EMRKSGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154275.11e-167PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R04e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ91e-149A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-65C3H family protein