PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000191.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 223aa    MW: 24648.6 Da    PI: 8.5965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000191.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-193078355
                      AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr ++ +g+++AeIrd ++    ++r++lg+f +ae Aa+a++aa+++l+g
  Itr_sc000191.1_g00011.1 30 FRGVRKRP-WGKFAAEIRDpWK----KTRVWLGTFNSAEAAARAYDAAARNLRG 78
                             8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-172986No hitNo description
SMARTSM003807.3E-362992IPR001471AP2/ERF domain
PROSITE profilePS5103223.1962986IPR001471AP2/ERF domain
PfamPF008473.2E-122978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-313086IPR001471AP2/ERF domain
PRINTSPR003674.9E-103041IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-213087IPR016177DNA-binding domain
PRINTSPR003674.9E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRRGRAAPEL KQSPAVGEAN GSGGSKEIRF RGVRKRPWGK FAAEIRDPWK KTRVWLGTFN  60
SAEAAARAYD AAARNLRGPK AKTNFPLPAP SHLPPYHNLQ FNQRPNANDS FVDQQMYMQE  120
HPILSQRPTS SGMSSTVESF SGPRPPRQQT APPPPSRRHP VVPDDCHSDC DSSSSVVDDM  180
DCENIASSSF RKPLPFDLNL PPAVEYNADA EAYELQCCTA LCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-192486972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183521.11e-128PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS88e-64ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV086e-92A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000574434e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-37ethylene responsive element binding factor 3