PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000193.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 244aa    MW: 26244.2 Da    PI: 7.7658
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000193.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-40211201100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++C+++pyf   +p+kfa vhk+FGasnv+k+l ++pe+ r da++slvyeA+ r+rdPvyG++g+i +lqqq
  Itr_sc000193.1_g00003.1  21 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLMDVPESLRADAANSLVYEANLRLRDPVYGCMGTIIALQQQ 106
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ l+ael+++++e
  Itr_sc000193.1_g00003.1 107 VQALQAELNEVRAE 120
                              **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.01920121IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-4121118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGLGRRHNVL GPAGTLNTVT PCAACKLLRR RCAQECPFSP YFSPLEPHKF ASVHKVFGAS  60
NVSKMLMDVP ESLRADAANS LVYEANLRLR DPVYGCMGTI IALQQQVQAL QAELNEVRAE  120
IMRYKFGESA ANIIIPSPQV SFFLTSGAVS IAAAPPPLPP PPPPLPPPVL LPRSSSFSLY  180
TPAPPSAASD NADFADYDPT ISGQDVCFPT MLGYPEPKGD LVSGLPRLGR SRHQAMGHLC  240
DYSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-402112811118LOB family transfactor Ramosa2.1
5ly0_B1e-402112811118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192512.11e-105PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T52e-67LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A2I4EQQ54e-78A0A2I4EQQ5_JUGRE; LOB domain-containing protein 15-like
TrEMBLA0A3S3NG723e-78A0A3S3NG72_9MAGN; LOB domain-containing protein 15
STRINGXP_002520837.18e-78(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-68LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]