PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000196.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 234aa    MW: 25470.3 Da    PI: 8.3579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000196.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-203583355
                      AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  Itr_sc000196.1_g00017.1 35 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 83
                             8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-363497IPR001471AP2/ERF domain
PfamPF008471.2E-123483IPR001471AP2/ERF domain
CDDcd000184.60E-183491No hitNo description
PROSITE profilePS5103223.2353491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-313591IPR001471AP2/ERF domain
PRINTSPR003673.0E-103546IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-223592IPR016177DNA-binding domain
PRINTSPR003673.0E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRRGRAAAAA KQAAAAGTPQ PGNANGSGGS QEIRFRGVRK RPWGRFAAEI RDPWKKTRVW  60
LGTFDSAEDA ARAYDAAART LRGPKAKTNF PLPINSHLPP YPHHQFIHTS NAPHDPFIDP  120
RMYSQDPQII STRPTSSGMS STVESFSGPR PPRLQTTTPP ARHHPRSPPV VPDDCHSDCD  180
SSSSVVEDGD YENFASSSFR KPLPFDLNMP PPMDAVHAGA EAEADDLHCT ALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-223596668ATERF1
3gcc_A6e-223596668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196482.11e-116PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS81e-72ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV081e-105A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373591e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-34ethylene responsive element binding factor 3