PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000199.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 253aa    MW: 29079.3 Da    PI: 4.747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000199.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-164381747
                             HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Itr_sc000199.1_g00031.1 43 YEEKMVIDLHAQLGNR-WSKIASYLP-GRTDNEIKNHWNTH 81
                             599*************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.297131IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-51730IPR009057Homeodomain-like
SuperFamilySSF466891.9E-211891IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-243187IPR009057Homeodomain-like
PROSITE profilePS5129424.8863286IPR017930Myb domain
SMARTSM007172.3E-133684IPR001005SANT/Myb domain
PfamPF002491.2E-134381IPR001005SANT/Myb domain
CDDcd001677.19E-114482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTVVRWRFLN MTTARLLRCG KSCRLRWTNY LRPDLKRGLL SDYEEKMVID LHAQLGNRWS  60
KIASYLPGRT DNEIKNHWNT HIKKKLKKMG IDPVTHRPLC SDDNKETAKQ RESVQEMDQR  120
EVVETPLMDQ STITDAFEED NKNMETSPTL VDPHQVNNNN GFFFSSPDNN EILATSLSSS  180
SSSSTSSLNS HGGFVSSVED DNNNKNNNVG GLFEDLVDFL PGFDWNHDYI NDVGLWVEDD  240
DYFKELCFVD DIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20188640108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182681.11e-123PREDICTED: protein ODORANT1-like
TrEMBLA0A0D2RAD85e-57A0A0D2RAD8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NBR71e-57A0A1U8NBR7_GOSHI; protein ODORANT1-like
TrEMBLA0A2P5SQZ91e-57A0A2P5SQZ9_GOSBA; Uncharacterized protein
STRINGGorai.008G060100.18e-58(Gossypium raimondii)
STRINGXP_009616533.17e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.16e-55myb domain protein 20