PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000200.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 232aa    MW: 25853.3 Da    PI: 8.6189
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000200.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1967121256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tkeq   Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Itr_sc000200.1_g00008.1  67 RKKLRLTKEQSLLLEESFRQNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSK 121
                              78889************************************************98 PP
2HD-ZIP_I/II114.28e-3767155189
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq+ lLEesF+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++evee
  Itr_sc000200.1_g00008.1  67 RKKLRLTKEQSLLLEESFRQNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEE 152
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lre 89 
                              Lr+
  Itr_sc000200.1_g00008.1 153 LRA 155
                              *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-1848121IPR009057Homeodomain-like
SuperFamilySSF466891.55E-1952124IPR009057Homeodomain-like
PROSITE profilePS5007117.00663123IPR001356Homeobox domain
SMARTSM003895.3E-1765127IPR001356Homeobox domain
CDDcd000862.80E-1666124No hitNo description
PfamPF000461.9E-1667121IPR001356Homeobox domain
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
SMARTSM003401.6E-20123166IPR003106Leucine zipper, homeobox-associated
PfamPF021834.4E-10123157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAEMPGSSTC LDLTISIPGS SSSSSGGECG MRDLDINQVP SGENIEGESM MEEEDDQSSI  60
NGGAHPRKKL RLTKEQSLLL EESFRQNHTL NPKQKEVLAM QLRLKPRQVE VWFQNRRARS  120
KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAKKVGP PTVLTPHSRE PLPASTLTMC  180
PRCERVTTTT ITSTTVRAVE KGGPTTTSQG GNPNLSAKTL QLLHPRHPSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160133.11e-133PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX16e-81HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH386e-81HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A068TXK61e-100A0A068TXK6_COFCA; Uncharacterized protein
STRINGVIT_01s0011g04870.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-69homeobox-leucine zipper protein 17