PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000203.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 520aa    MW: 56212.9 Da    PI: 5.7748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000203.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09330377455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Itr_sc000203.1_g00032.1 330 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 377
                              8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17324396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-11324381No hitNo description
Gene3DG3DSA:4.10.280.102.9E-17326395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682326376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6330377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDKQNLFLSD GITMPYGIGV EANDFFNPSW ENPVDQSDPF ESALSSMVSS PAASNAGVAP  60
PASNASGGNE SFVLRELIGR LGSSFDNPGD ISPAACTNSS CYNTPLNSPP KLNLSSMADH  120
QIRAANFPIH PALSNFSADP GFAERAARFS CFSDKSLVNS GKVSGKVQGS QMAPIQENSA  180
PSKKLTLENS ELGDSRENST VSEQIPVGET AKNDANSRKR KSAAKGKAKE TTTTATPSSS  240
SANVNFQFCF ILLCSVLLMF AEIKESLTLP MQATSQNNES NPKRIKSDEQ NSGNDKDSSP  300
KGNDKAAGEN KEPPKDYIHV RARRGQATDA HSLAERVRRE KISERMKLLQ DLVPGCNKVT  360
GKAVMLDEII NYVQSLQRQV EFLSMKLATI NPRMEFNMEA LLSKDMYQYR GAMAQNMFSS  420
EASGSPIPYS FQSLPSIPNL HTLLPKGSEV PFPINQLNAN NSSRNLGLAL PPMDTFLEPA  480
SQVPAFFEDD LNTVVQMGFG QNQSQNFHGT VGASGMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166349.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A328DVB30.0A0A328DVB3_9ASTE; Uncharacterized protein
STRINGXP_009788675.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-63bHLH family protein