PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000204.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 493aa MW: 53463.9 Da PI: 5.8963

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000204.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.6e-39	143	203	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+s Itr_sc000204.1_g00002.1 143 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCRSCQRYWTAGGSMRNLPVGAGRRKNKSSA 203 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	130	200	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	145	201	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	147	201	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	149	185	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MGEGKDPGIT LFGKKIPLPL RVVVFAGEES AGGDSGGVNS PDESNSVSER VRCFDNENIE 60 EESKREDEMD QLPGEASETI SEEKDEDEDE NAGGKESCKA LQESGNNTET PSAGDNSPTA 120 KSTKTEDDQT ETDSSKEKTL KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RHFCRSCQRY 180 WTAGGSMRNL PVGAGRRKNK SSASHCHITI SNANVSDALH AMQAEAPNGF HYPAHYKPNG 240 TVLSFSPNSS LRECMGSVLN PGETKSPNGT QNGFSKPDTR NSYKTGNDFS SKSSVTNSNS 300 KAEGSKNAPQ DTTVMQNVHA FPSPVPYLPK VPWNAAAPLP PIFPSGVPVT FCPATYWNYC 360 LPGPWSLPWL TPPSPTVSQK SSVSSPNSSL GKHPRDGDSL EPNNPKGKES SEQKSPERRI 420 LVPKTLRIDD PDEAAKSSIW ATLGIKYDSI SKGSMFNALE QKSDDKNHTT NASMALQANP 480 AALSRSLTFQ ESI

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MGEGKDPGIT LFGKKIPLPL RVVVFAGEES AGGDSGGVNS PDESNSVSER VRCFDNENIE  60
EESKREDEMD QLPGEASETI SEEKDEDEDE NAGGKESCKA LQESGNNTET PSAGDNSPTA  120
KSTKTEDDQT ETDSSKEKTL KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RHFCRSCQRY  180
WTAGGSMRNL PVGAGRRKNK SSASHCHITI SNANVSDALH AMQAEAPNGF HYPAHYKPNG  240
TVLSFSPNSS LRECMGSVLN PGETKSPNGT QNGFSKPDTR NSYKTGNDFS SKSSVTNSNS  300
KAEGSKNAPQ DTTVMQNVHA FPSPVPYLPK VPWNAAAPLP PIFPSGVPVT FCPATYWNYC  360
LPGPWSLPWL TPPSPTVSQK SSVSSPNSSL GKHPRDGDSL EPNNPKGKES SEQKSPERRI  420
LVPKTLRIDD PDEAAKSSIW ATLGIKYDSI SKGSMFNALE QKSDDKNHTT NASMALQANP  480
AALSRSLTFQ ESI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167102.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	C4B6D7	0.0	C4B6D7_IPOBA; Dof zinc finger protein
STRING	Solyc03g115940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-76	cycling DOF factor 2