PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000207.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 218aa MW: 25318.7 Da PI: 8.7049

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000207.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.3	5.7e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++s++gkl+ey+s Itr_sc000207.1_g00004.1 9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISTSGKLHEYIS 59 79***********************************************86 PP
2	K-box	61.5	3.4e-21	71	141	1	71
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 yqk+ g +l++++ e++q +l+kL++ ++ L+re+R+++Ge+L++Ls+++L +L +++++s+k iR++K + Itr_sc000207.1_g00004.1 71 YQKTVGADLWNHHFEKMQDQLKKLRDVNRALRREIRQRMGEGLNDLSFEQLTELIEDVDNSIKLIRERKVR 141 78999999*************************************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.029	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.66E-41	2	80	No hit	No description
SuperFamily	SSF55455	7.85E-36	3	94	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-28	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.6E-11	83	143	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	10.346	84	173	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMIST SGKLHEYISP 60 STSTKQLFDQ YQKTVGADLW NHHFEKMQDQ LKKLRDVNRA LRREIRQRMG EGLNDLSFEQ 120 LTELIEDVDN SIKLIRERKV RNVEEIHRNL LLECEARQED PYGLVDHEGD YNSVLGFPNG 180 GPRILALRLQ PDHHHHHHHH GHLHSGGGSD LTTFTLLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	6e-16	1	59	1	59	MEF2 CHIMERA
6byy_B	6e-16	1	59	1	59	MEF2 CHIMERA
6byy_C	6e-16	1	59	1	59	MEF2 CHIMERA
6byy_D	6e-16	1	59	1	59	MEF2 CHIMERA
6bz1_A	7e-16	1	59	1	59	MEF2 CHIMERA
6bz1_B	7e-16	1	59	1	59	MEF2 CHIMERA
6bz1_C	7e-16	1	59	1	59	MEF2 CHIMERA
6bz1_D	7e-16	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ142087	1e-123	HQ142087.1 Ipomoea aquatica MADS (MADS) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155860.1	1e-137	PREDICTED: floral homeotic protein PMADS 1-like
Swissprot	P23706	1e-122	DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBL	A0A484KVP6	1e-133	A0A484KVP6_9ASTE; Uncharacterized protein
STRING	XP_009794650.1	1e-127	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2314	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-76	MIKC_MADS family protein

Publications ? help Back to Top
Schwarz-Sommer Z, et al. Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development. EMBO J., 1992. 11(1): p. 251-63 [PMID:1346760] Sommer H, et al. Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J., 1990. 9(3): p. 605-13 [PMID:1968830] Gallois JL, et al. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]