PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000209.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 264aa MW: 29918.1 Da PI: 8.3189

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000209.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.1e-19	13	105	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffk+l s + + l+lp f ++ g+k +s+ ++ s +sW+vkl +k+s+ry++++GW+ Fv++n+L+ gDfvvF l++ Itr_sc000209.1_g00012.1 13 FFKIL--SATDFPSVLRLPPLFG-KIFGEKLSSMPSLVMAGSRKSWTVKL--QKSSNRYLFADGWSVFVNDNQLEIGDFVVFWLMD 93 77888..5555566799999999.77677889999999999*******..*******************************9 PP S.SEE..EEEEE-S CS B3 87 r.sefelvvkvfrk 99 + s+f +v+++++ Itr_sc000209.1_g00012.1 94 NySTF--RVQLYDR 105 98999..8888876 PP
2	B3	50.3	4.4e-16	166	249	9	95
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++++ + +++pk f+ee g+ ++++++l de+g++We+k+ +k++g+ ++ ++ W +F n+L g +++F+++g++++++ Itr_sc000209.1_g00012.1 166 SASTDDEMIIPKGFVEETGIA--GKRKIMLLDEQGNEWEIKI--SKQDGEfVMCGGRWTDFRIVNRLSKGYVCTFEMVGSHGGHPQ 247 6677888********9866..6679***********..9999885666777******************999988887 PP EE CS B3 94 vk 95 ++ Itr_sc000209.1_g00012.1 248 LQ 249 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-22	6	108	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.4E-21	7	108	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.70E-19	11	104	No hit	No description
PROSITE profile	PS50863	13.028	11	106	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-16	13	105	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-12	13	106	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.0E-17	155	247	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-16	157	243	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.126	158	256	IPR003340	B3 DNA binding domain
CDD	cd10017	2.29E-13	159	254	No hit	No description
SMART	SM01019	5.9E-16	161	254	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-13	166	250	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSSFNMQNEN PSFFKILSAT DFPSVLRLPP LFGKIFGEKL SSMPSLVMAG SRKSWTVKLQ 60 KSSNRYLFAD GWSVFVNDNQ LEIGDFVVFW LMDNYSTFRV QLYDRTCCDK RLSSSRFSPG 120 SSGENSSNLD QVIKVKKESD IEDDKSEMLI GPSKTTTNPS FVTILSASTD DEMIIPKGFV 180 EETGIAGKRK IMLLDEQGNE WEIKISKQDG EFVMCGGRWT DFRIVNRLSK GYVCTFEMVG 240 SHGGHPQLQF HLEKRSRGRP MGRH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176350.1	1e-172	PREDICTED: B3 domain-containing protein REM5-like isoform X1
TrEMBL	A0A328DXN0	1e-85	A0A328DXN0_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6635	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	1e-16	B3 family protein