PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000209.1_g00034.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 395aa    MW: 43583.1 Da    PI: 5.1502
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000209.1_g00034.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.34.3e-1068112341
                 zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                              ++ C+ +++ ++ ++C+ +   lC+dC   +H        H +vp
  Itr_sc000209.1_g00034.1  68 MWLCDSCQRAPAVFWCNADAASLCADCDADIHAAnplarrHHRVP 112
                              689*****************************6678888877776 PP
2CCT68.41.9e-23326369144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Itr_sc000209.1_g00034.1 326 REARVLRYREKKKSRKFEKTIRYASRKAYAETRPRIKGRFTKRT 369
                              9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2E-1466113IPR000315B-box-type zinc finger
PROSITE profilePS5011910.75166113IPR000315B-box-type zinc finger
PfamPF006439.9E-868113IPR000315B-box-type zinc finger
CDDcd000211.22E-969113No hitNo description
PfamPF062032.1E-17326368IPR010402CCT domain
PROSITE profilePS5101716.47326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSKEESSCGD LDFGGSSNIK THNWASVCHT CHSVPCSINC RTNSAYLSAS SQGCMHATNR  60
ETSAHEHMWL CDSCQRAPAV FWCNADAASL CADCDADIHA ANPLARRHHR VPLLGTVYGP  120
PDTDQGGGGP MMITHAGDAT EDDGFMRDAE ETTLDEEDED EAASWLLLNL IPAKNNNSSQ  180
GGNNSNGMLY AGKVEDAYLD LVEYSSCQDN QYSDDYSINH QQQYSVPQKK MKYEGDCVVP  240
GKGKNQLQYH QHGSFQFLGV EYENSNTGYP ASISQSVSIS SFDVGVVPES TITDASFAYS  300
RPSKGTIDLL SGPPAQMPSQ LTPMDREARV LRYREKKKSR KFEKTIRYAS RKAYAETRPR  360
IKGRFTKRTD VETEEDQIFS TALMAEGGYG IVPYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176391.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
TrEMBLC0Z3T81e-150C0Z3T8_SOLTU; CONSTANS protein
STRINGPGSC0003DMT4000260651e-150(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-81CONSTANS-like 2