PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000211.1_g00030.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 391aa    MW: 43254.9 Da    PI: 7.5415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000211.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06326226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             k++lC+ffa  G C  G+ C F+H+
  Itr_sc000211.1_g00030.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                             99****6666.*************5 PP
2zf-CCCH24.83.9e-083454526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                             +C ++++ G+C yG+rC++ H+
  Itr_sc000211.1_g00030.1 34 ICTYYQK-GICAYGSRCRYEHV 54
                             7******.***********997 PP
3zf-CCCH24.74.1e-08143165326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C+ fa+ G C++Gd+C+++Hg
  Itr_sc000211.1_g00030.1 143 HPICS-FAAAGSCPRGDNCPCIHG 165
                              57899.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1452956IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-43453IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183140167IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-4141166IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5143165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.36E-14198273No hitNo description
Gene3DG3DSA:3.30.40.104.1E-10202268IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00132208268No hitNo description
PfamPF000971.6E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.43209267IPR001841Zinc finger, RING-type
SMARTSM001848.5E-8209266IPR001841Zinc finger, RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTYYQK GICAYGSRCR YEHVKVSRLQ  60
SSAPSSSIPS HQNLLSTSGS LTVASATVVN GSGPVPGITT EHFALEGLIH TPDKPAWEQK  120
SGPHDLLEID DIVELKSLNP ADHPICSFAA AGSCPRGDNC PCIHGDICPT CGKHCLHPFR  180
PQEREEHMKT CEKRQNHLEA LKHSQEIECS VCLERVLSKQ TAAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGLDVNSAL RACPICRKLS YFVIPSVIWY SSKEEKNEIV DNYKAKLRGR  300
MWTSGFPGIA CQPHSLKETI LLLDPSLLVC EVDIYAQWPH DLNVIYTILL IASTLTLGME  360
LAHSGLVVST RIVVVLFGIC SMLLNIARCI A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186621.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
SwissprotE0X9N41e-129C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A484LHK00.0A0A484LHK0_9ASTE; Uncharacterized protein
STRINGSolyc10g038000.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-122C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]