PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000215.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 352aa    MW: 38625 Da    PI: 5.9787
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000215.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16204240135
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  Itr_sc000215.1_g00002.1 204 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 240
                              **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.60966101IPR010399Tify domain
SMARTSM009796.0E-666101IPR010399Tify domain
PfamPF062003.8E-969100IPR010399Tify domain
PROSITE profilePS5101712.372132174IPR010402CCT domain
PfamPF062034.2E-14132173IPR010402CCT domain
SuperFamilySSF577164.04E-12197253No hitNo description
PROSITE profilePS501149.341198256IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-12198251IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.5E-14202245IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.87E-15203256No hitNo description
PROSITE patternPS003440204231IPR000679Zinc finger, GATA-type
PfamPF003209.4E-14204240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAANPRPLQA IPVGDHAPPA VSLDDVDDDN GTYEDDTMDE EEYSRVNSKK HRGGSLTERL  60
KGGVVVASRT SELTLAFEGE VYVFPAVTPE KVQAVLLLLG GPDIPTAVPT VDVPLNSKVE  120
DDTPKHPNLS RRIASLVRFR EKRKERCYDK KIRYTVRKEV AQRMHRKNGQ FASLKGGSGS  180
SSWDPSNCVL EDGTPQSETV PRRCHHCGVS ENCTPAMRRG PDGPRTLCNA CGLKWANKGT  240
LRDLSKGGRI MSLEHRELDT PTDIKPSVLQ NESFPQNQDE LGTPGDHLKT ATLGTQDHSD  300
NHNENLPGNG KDRANKIPDV IVRSPGHIDV QETLVDFGNG SETEIDIPAN FE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174847.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL72e-61GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067GNE41e-133A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLV4V5081e-133V4V508_9ROSI; Uncharacterized protein
STRINGXP_006433794.11e-134(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-64ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]