PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000215.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 302aa MW: 33244.2 Da PI: 6.0439

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000215.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.7	5.9e-17	188	222	1	33
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++C+t++ Tp++Rrgp g++tLCnaCGl+++ k Itr_sc000215.1_g00003.1 188 CTHCNTSSkaTPMMRRGPAGPRTLCNACGLFWANK 222 ********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	13.487	62	97	IPR010399	Tify domain
SMART	SM00979	1.6E-9	62	97	IPR010399	Tify domain
Pfam	PF06200	5.8E-11	65	96	IPR010399	Tify domain
PROSITE profile	PS51017	11.747	123	165	IPR010402	CCT domain
Pfam	PF06203	1.1E-13	123	165	IPR010402	CCT domain
SMART	SM00401	6.5E-9	182	234	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.47E-10	183	227	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.0E-13	187	222	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.4E-14	188	222	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.57E-11	188	222	No hit	No description
PROSITE pattern	PS00344	0	188	215	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MQPTSAPWHF PGGGDCAAGK EEPTNNAGIG YEVQCIEGGA IGGFDGVEVP APYGSVFTAA 60 DAAYAPDQLT LSFRGQVYVF DAVTLEKVQS VLLLLGGYEY TPGAYPTQRE NTDYSARCSD 120 PKRAESLNRF RQKRKERCYG RKIRYNIRHE VAVRMQRRKG QFASKNTIAG NAVMESGQDD 180 NSHQEIWCTH CNTSSKATPM MRRGPAGPRT LCNACGLFWA NKVSMFTSYF ELSLCSAILG 240 TMRVLPKRRC SNTLTEMEDE DEDDSDSDYG IPLPLHYNID YMASSAGDSS AVLSPERGCQ 300 QS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174105.1	0.0	PREDICTED: GATA transcription factor 25 isoform X1
Swissprot	Q9LRH6	1e-59	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A068TXX6	7e-85	A0A068TXX6_COFCA; Uncharacterized protein
STRING	XP_009759908.1	2e-77	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14030	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	3e-61	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]