PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000215.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 247aa MW: 27500.3 Da PI: 8.909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000215.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.5e-07	38	82	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++E RR+riNs +++Lr+l P + + +K +L++Av+ +k+L Itr_sc000215.1_g00022.1 38 RHAKAESERRKRINSHLSTLRKLFPDL---T---KDKPRVLTEAVKELKEL 82 5999**********************8...2...46667777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.07E-5	29	87	No hit	No description
SuperFamily	SSF47459	4.71E-8	32	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	38	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	38	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	4.01E-5	128	198	No hit	No description
CDD	cd04873	9.82E-4	128	197	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.2E-6	128	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MKMVNSIPLQ TQTEVDCHHH HHHRRYLAKK KSKEAANRHA KAESERRKRI NSHLSTLRKL 60 FPDLTKDKPR VLTEAVKELK ELRQKVAEKL EEHQSEGETP LFLPGENDEV AVVPCDGEGE 120 GEWAVKATIC CEDRPGLNRD LTEAVQSVKG RVVRAEMATV GGRTKVDVVV RWCKEQGGGG 180 EKDLGSLRRA LKAVVENRSL GMLLCRRVRA DTWPGPKVDE HANNLAQICS SLSNGSGLPD 240 SSLLNTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	48	KKKSKEAANRHAKAESERRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174238.1	1e-153	PREDICTED: putative transcription factor bHLH107
TrEMBL	A0A484LCP8	4e-71	A0A484LCP8_9ASTE; Uncharacterized protein
STRING	XP_009779545.1	8e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13713	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	5e-26	bHLH family protein