PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000216.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 259aa    MW: 27559.5 Da    PI: 7.7179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000216.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10143190455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L+ l+P +    +k   Ka++L + ++Y++sLq
  Itr_sc000216.1_g00026.1 143 SHSLAERARREKISERMKILQNLVPGC----NKVIGKASVLDEIINYVQSLQ 190
                              8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-18137207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-10137194No hitNo description
PROSITE profilePS5088815.751139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-8143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLNDGGAYHG SSNAQFNMAE IWPFPISSGG ATSYALAPAE DANAVSDPMV IDRRVNQSGG  60
GGGRKRKEED ESAKGGAGAS TSGNGLSEDD SKRLKTGGQN KIPRSKADGE GASGKQAEQA  120
AKAAEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQNLVPGCN KVIGKASVLD  180
EIINYVQSLQ HQVEFLSMKL EAVNSRIPPG IEGLPSKDFP PQIFDTSGLA FGSQATRDYG  240
SSTSPDWLHM QTGGGFERT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170502.11e-169PREDICTED: transcription factor BPE-like isoform X2
SwissprotQ69WS35e-71BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1S4AX061e-119A0A1S4AX06_TOBAC; transcription factor bHLH79-like isoform X1
TrEMBLA0A1U7W7M11e-119A0A1U7W7M1_NICSY; transcription factor bHLH79 isoform X1
STRINGXP_009776012.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-73BIG PETAL P