PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000218.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 131aa    MW: 13914.7 Da    PI: 4.9229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000218.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-194893147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Itr_sc000218.1_g00009.1 48 KGPWSPEEDAILCELVSKFGARNWTLIARGIP-GRSGKSCRLRWCNQ 93
                             79******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4784398IPR017930Myb domain
SuperFamilySSF466891.46E-1845104IPR009057Homeodomain-like
SMARTSM007174.5E-164796IPR001005SANT/Myb domain
PfamPF002491.7E-184893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2349104IPR009057Homeodomain-like
CDDcd001671.56E-165092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEGETEERSD LKLVAVAAAS DANGDGGAEA MVVDGGGDEN SGSGGKVKGP WSPEEDAILC  60
ELVSKFGARN WTLIARGIPG RSGKSCRLRW CNQLDPSVKR KPFSGKTIAI SNSISLFDLL  120
FGVDFGQRFF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1847104663B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151687.15e-61PREDICTED: myb-related protein 330-like
SwissprotO041926e-27MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A484LLU13e-42A0A484LLU1_9ASTE; Uncharacterized protein
STRINGPOPTR_0008s06320.16e-35(Populus trichocarpa)
STRINGEMJ065141e-33(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1683345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-30myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]