PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000219.1_g00047.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 698aa    MW: 75664.2 Da    PI: 6.3978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000219.1_g00047.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32307364260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Itr_sc000219.1_g00047.1 307 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHQK 364
                              8****************************************.***************85 PP
2WRKY103.89.5e-33493551159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Itr_sc000219.1_g00047.1 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 551
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.227301365IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-28304365IPR003657WRKY domain
SuperFamilySSF1182901.57E-25305365IPR003657WRKY domain
SMARTSM007741.9E-35306364IPR003657WRKY domain
PfamPF031061.4E-24307363IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-37478553IPR003657WRKY domain
SuperFamilySSF1182901.57E-28485553IPR003657WRKY domain
PROSITE profilePS5081138.664488553IPR003657WRKY domain
SMARTSM007741.5E-37493552IPR003657WRKY domain
PfamPF031066.2E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MAGFGDHMPI MGDWVPPSPS PRAFFSSILG NDIESRSNAS QPLVPDPKEY ASSGNSDCKN  60
GVQGSDQTPK LSSLSERNMN SHGGLLERMA ARAGFSAPKL KTDSIRPPAL VQNQELRSPY  120
FTIPPGLSPT TLLDSPVFLS NSLVQSSPTT GKFAFPSIGD SRNSALFMGA SDNNKETSFN  180
NNDASSFAFK PVIETGPSLF PETISKVPPS NLSWQSVPGI EVSVHSENAL VHQRAEPNMV  240
HTQSGTLEQS VFSRSYTEGV SNIISEPRTF QAVAGSMEHS PPPYEQQDED IDQRGGGDPN  300
AVGAPADDGY NWRKYGQKQV KGSEYPRSYY KCTHPNCQVK KKVERSHEGH ITEIIYKGTH  360
NHQKPPPNRR AAFGSENAEQ DGTIGIGDPI WENVQNGSGA GGPDWGNDNL EVTSSGTQFE  420
PRDPVEGSSP FSNEEDEDDR GTHGSVSLPE GEGDESDSKR RKIETYATDM SGATRAIREP  480
RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCTVRKHV ERASHDLKSV  540
ITTYEGKHNH DVPAARNSNH PNSGASNGLS SQTTATQGHV HRPEPSQLQN TMSQFARPPS  600
LASFGFPGGP QLGHTLGFGF GMNQQGLANL AMAGLGPNQG KFPVPSVHSY LGQQRPMNDM  660
RPKAEPKMEP SSDPGLNLSN DSSVYQQFTS RLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36307554878Probable WRKY transcription factor 4
2lex_A2e-36307554878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183198.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG771e-172WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0P0UVP00.0A0A0P0UVP0_SOLTU; Transcription factor
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-167WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]