PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000220.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 130aa    MW: 15281.6 Da    PI: 9.9057
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000220.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.41.6e-07164871103
                              TTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  71 kskskekiweFkhksFkkgkkellekikrkkse 103
                               +k ++k weF+h++F++g+++ll +i rkk e
  Itr_sc000220.1_g00001.1  16 FKKVTPKRWEFQHEKFQRGRRHLLVEIARKKAE 48 
                              22224888**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-61145IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-41545IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGKHCLSTLN DHNKGFKKVT PKRWEFQHEK FQRGRRHLLV EIARKKAEPS AFPAYLRANY  60
EEEEDQDTIT SSTSTTTLSS SSRLLLMNLL EENKKLRKER MELQMQIAHF KTLQMRLLEC  120
LSSHCMGTQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171865.12e-57PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A2G9FWJ62e-35A0A2G9FWJ6_9LAMI; Uncharacterized protein
STRINGXP_004505050.17e-34(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-09heat shock transcription factor B4