PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000223.1_g00036.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 110aa MW: 11929.4 Da PI: 7.2713

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000223.1_g00036.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.6	1.7e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e Itr_sc000223.1_g00036.1 1 MVYEANARVRDPVYGCVGAISSLQQQIDMLQTQLAIAQAE 40 69*********************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.674	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-11	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MVYEANARVR DPVYGCVGAI SSLQQQIDML QTQLAIAQAE VVHMRMRHSV SSASAAAGGN 60 SPENMAASPP TPASRQAPPP YHHHHQTRSH FSMDMVMDQA TWGNSHCGYA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155334.1	6e-51	PREDICTED: LOB domain-containing protein 4-like
TrEMBL	A0A484K2K5	4e-35	A0A484K2K5_9ASTE; Uncharacterized protein
STRING	Solyc11g045530.1.1	5e-34	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-20	ASYMMETRIC LEAVES 2-like 9