PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000225.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 250aa    MW: 27830.8 Da    PI: 7.2657
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000225.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.4e-3252108259
              ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                              +++rYkeClkNhA+ +GghavDGCgEfmp+ geeg+ ++lkCaAC+CHRnFHR+e +e
  Itr_sc000225.1_g00014.1  52 TNYRYKECLKNHAVGIGGHAVDGCGEFMPA-GEEGSLDGLKCAACNCHRNFHRKEAAE 108
                              5789*************************9.999********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2235106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2854106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.9E-3055105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57656105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.6E-31175249IPR009057Homeodomain-like
SuperFamilySSF466892.51E-18177248IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-25187243IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMEFDEERE EEMEMEEIEE AGDYQTPAGR GLEGAPARKS GVGSAAAAAT TTNYRYKECL  60
KNHAVGIGGH AVDGCGEFMP AGEEGSLDGL KCAACNCHRN FHRKEAAESE GYARHQSPSP  120
HHHHHNLHPL HHHHHFSTFS SYRAPHPSGY LHVTPPSHHR QLALPSSSRD EEDMSNPSSS  180
GGGGGSKKRF RTKFTAEQKD KMLALAERLG WRIQKQDEAA VQQFCAEANV KRHVFKVWMH  240
NNKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-271862451675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174170.11e-125PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ6YXH52e-75ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A1U8GJS24e-93A0A1U8GJS2_CAPAN; zinc-finger homeodomain protein 2-like
STRINGXP_009602563.18e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-71homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]