PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000226.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 328aa    MW: 36566.2 Da    PI: 7.7033
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000226.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-104182243
                             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43
                             k+ k  rr+++NReAAr+sR+RKka++++Le+   +L++  +
  Itr_sc000226.1_g00013.1 41 KDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLSQIEQ 82
                             677999*************************98877776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-83787No hitNo description
SMARTSM003383.4E-640103IPR004827Basic-leucine zipper domain
PfamPF001703.3E-74182IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154286IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-74487No hitNo description
CDDcd147082.37E-214496No hitNo description
PROSITE patternPS0003604762IPR004827Basic-leucine zipper domain
PfamPF141446.3E-31127201IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTDISPMTDT STDADTEDKN SRFPSDQSLG TVASNGSDKT KDQKTLRRLA QNREAARKSR  60
LRKKAYVQQL ENSRMKLSQI EQELQRARQQ GIFISSSGDH SQSMSGNGAM AFDVEYSRWV  120
DEQNKRINEL RGAVNSHAGD GELRIIVDSI LAHYDDIFRI KADAAKGDVF HILSGMWKTP  180
AERCFLWLGG FRSSELLKLL INHLEPLTEQ QLLAIHNLQE TSQQAEDTLS QGMEALQQSL  240
AETLIGTLGS SSSSGNVANY MGQMAMAMGK VGALEGFICQ ADKLRQSTLQ QLHNILTTRQ  300
SARALLAIND YFSRLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190251.10.0PREDICTED: transcription factor TGA2.1-like
RefseqXP_019190252.10.0PREDICTED: transcription factor TGA2.1-like
RefseqXP_019190254.10.0PREDICTED: transcription factor TGA2.1-like
SwissprotQ415581e-173HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
SwissprotQ7X9931e-173TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLA0A068UNV80.0A0A068UNV8_COFCA; Uncharacterized protein
STRINGXP_009794636.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-152TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]