PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000228.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 294aa    MW: 33104.7 Da    PI: 7.3944
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000228.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-091546132
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                             +g+WT++Ed ll ++++++G g W++++ + g
  Itr_sc000228.1_g00006.1 15 KGAWTEQEDNLLRKCIHKYGEGKWHLVPVRAG 46
                             79*************************99998 PP
2Myb_DNA-binding37.65e-12100143146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg +  +E +l+ +++k+lG++ W++Ia +++ gRt++++k+ w++
  Itr_sc000228.1_g00006.1 100 RGDFNLDEIDLIMRLHKLLGNR-WSLIAGRIP-GRTANDVKNLWNT 143
                              788999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2531061IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-191245IPR009057Homeodomain-like
SuperFamilySSF466891.79E-71257IPR009057Homeodomain-like
SMARTSM007172.1E-101496IPR001005SANT/Myb domain
PfamPF002491.0E-71546IPR001005SANT/Myb domain
CDDcd001672.34E-71794No hitNo description
Gene3DG3DSA:1.10.10.608.2E-197796IPR009057Homeodomain-like
SuperFamilySSF466891.63E-1780152IPR009057Homeodomain-like
PROSITE profilePS5129419.76295149IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2097148IPR009057Homeodomain-like
SMARTSM007171.2E-999147IPR001005SANT/Myb domain
PfamPF002498.3E-11100143IPR001005SANT/Myb domain
CDDcd001672.25E-7103145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MADSSSSEPP SGVKKGAWTE QEDNLLRKCI HKYGEGKWHL VPVRAGKCCV ERMNDLYSKQ  60
LQFPFNTTAV SAMTMVSSLN RCRKSCRLRW LNYLRPDIKR GDFNLDEIDL IMRLHKLLGN  120
RWSLIAGRIP GRTANDVKNL WNTRLQKKTI ANNTPSSGQE KWKDKAPKAT ENTAVIRPRP  180
RRFVMTSSSR TLPITGKTTI VTSEVVQFQG HNMPPPVPAA AESTSGPRLI ENADPNNSII  240
DLPGEAETSD DLGQWLDDFL LDMEFDGDGM ACMQEGQIEW CDFHIDSDLL DLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17151497108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182607.11e-159PREDICTED: transcription factor MYB90-like isoform X2
TrEMBLQ1HAY21e-97Q1HAY2_IPONI; R2R3-MYB transcriptional regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-55myb domain protein 113