PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000229.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 446aa    MW: 48837.1 Da    PI: 5.1145
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000229.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06444539
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                             +C+ ++e++ + +C+++   lC +C  + H+       H++
  Itr_sc000229.1_g00002.1  4 ICEFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44
                             7*****************************65677777765 PP
2zf-B_box25.82.2e-084688440
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +C++++++++   C++ +  lC++C   +H++      H+++
  Itr_sc000229.1_g00002.1 46 LVCERCNSQPAVVRCTEERISLCQNCDWMGHSNsgtgstHKRQ 88
                             68*****************************888999999876 PP
3CCT60.94.1e-21389430142
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                              R  a+lRY+eK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk
  Itr_sc000229.1_g00002.1 389 RTDAVLRYREKKKTRKFDKRVRYASRKARADVRRRVKGRFVK 430
                              8899*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
SMARTSM003369.5E-8447IPR000315B-box-type zinc finger
CDDcd000211.94E-7447No hitNo description
PROSITE profilePS501198.7594390IPR000315B-box-type zinc finger
CDDcd000213.89E-54777No hitNo description
SMARTSM003362.14890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.219389431IPR010402CCT domain
PfamPF062036.8E-16389430IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGYICEFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAVVRC  60
TEERISLCQN CDWMGHSNSG TGSTHKRQAV SCYSGCPSAA ELSSIWSFLL DFPSVGDSTC  120
EQGMGSMSIT DNHRRDKGTE GKNSSRDLST IAEGSDEPTE NPSTNWMGSS METLDKRLNN  180
IELPTVSTHP TSPKAKLLLG SKDTIFLLEV LLSSLRVTLA SYPSIIQVCY PGTEDPSIYE  240
DNAFYGDFNM DEVDLSIENY EELFGMSLND PEHLFENQGI DGLFETEDMS GANSGCKGAN  300
AIEGSSIGRV NANQPACSNA ASADSVMSCK TEPNPCFARQ GQSNISFSNI TGESSGGDYQ  360
DCGASSMFLM GEPPWGPSGP ENSLPSSSRT DAVLRYREKK KTRKFDKRVR YASRKARADV  420
RRRVKGRFVK PGDAYDYDPL NQTRSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162522.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019162523.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019162524.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019162525.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019162526.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019162527.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019162529.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9SSE51e-133COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S3Z9K50.0A0A1S3Z9K5_TOBAC; zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A1U7VPN60.0A0A1U7VPN6_NICSY; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_009768363.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-106CONSTANS-like 9