PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000232.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 338aa MW: 36938.1 Da PI: 6.4415

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000232.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	161	215	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Itr_sc000232.1_g00016.1 161 RKKLRLSKEQSAYLEESFKEHHTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTK 215 788899***********************************************98 PP
2	HD-ZIP_I/II	127.2	7.2e-41	161	251	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rlskeq++ LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +e Itr_sc000232.1_g00016.1 161 RKKLRLSKEQSAYLEESFKEHHTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLREENRRLHKELQE 246 69************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 Lr +lk Itr_sc000232.1_g00016.1 247 LR-ALK 251 *9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-18	143	215	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-18	152	218	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	157	217	IPR001356	Homeobox domain
SMART	SM00389	1.7E-15	159	221	IPR001356	Homeobox domain
CDD	cd00086	2.08E-15	161	218	No hit	No description
Pfam	PF00046	6.7E-16	161	215	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	192	215	IPR017970	Homeobox, conserved site
SMART	SM00340	3.7E-24	217	260	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.0E-10	217	251	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MELGLSLGLG FTAAVNERLG RQEDGQEPEK SHRSNDSDED DDVDVEDYDH ATSSEEEPHQ 60 SADQRLAIFV PPVPLDLLPP APVQNKNVAA ARAAPFPAAE EVSSPNSVAS SFRAIDFSIF 120 KRNRNGAAVD DGRASDAAAN GGASEPASRA SDEDENGVNA RKKLRLSKEQ SAYLEESFKE 180 HHTLNPKQKH ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLREENRRL 240 HKELQELRAL KSSNPFYMHL PATTLTMCPS CEKVASTSNA PPPQAAAAAT VSAPAPTTPT 300 TAAPVDSIPK PIPFLAKPRF FPFTAAHNPG HPHQSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	217	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187098.1	1e-178	PREDICTED: homeobox-leucine zipper protein HOX11-like
Swissprot	P46665	2e-77	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A484LHR9	1e-116	A0A484LHR9_9ASTE; Uncharacterized protein
STRING	XP_009617361.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	7e-77	homeobox from Arabidopsis thaliana